YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28806040
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.90
Transmembrane Helix	26	46	0.89
Cytoplasmic	47	63	0.84
Transmembrane Helix	64	85	0.90
Non-Cytoplasmic	86	105	0.85
Transmembrane Helix	106	128	0.92
Cytoplasmic	129	136	0.95
Transmembrane Helix	137	157	0.95
Non-Cytoplasmic	158	197	0.91
Transmembrane Helix	198	218	0.94
Cytoplasmic	219	228	0.80
Transmembrane Helix	229	248	0.94
Non-Cytoplasmic	249	397	0.99
Transmembrane Helix	398	419	0.93
Cytoplasmic	420	430	0.86
Transmembrane Helix	431	454	0.88
Non-Cytoplasmic	455	480	0.91
Transmembrane Helix	481	503	0.87
Cytoplasmic	504	538	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSRHIGVT MIDVVDLSRL QFALTAMYHF LFVPLTLGMA FLLAIMESMY VMTNKQIYKD  60
   61 MTKFWGKLFG INFALGVATG LTMEFQFGTN WSYYSHYVGD IFGAPLAIEA LVAFFLESTF 120
  121 VGLFFFGWDR LSKRQHLAVT WLVALGSNFS ALWILIANGW MQNPVGADFN FETMRMEMVS 180
  181 FSEVVLNPVA QVKFVHTVAS GYTCGAMFIL GISSYYLLKG RDIAFARRSF AIAASFGIAA 240
  241 ILSTIVLGDE SGYELGEVQK VKLAAIEAEW HTEPAPAAFT LFGVPNQETM HTDYAIKIPY 300
  301 VMGIIATRSF DEQVTGLRDL RDEHVERIRG GMYAYELLEK LRAGDKSEEN MTAFDEVKGD 360
  361 LGYGLLLKRY TDNVVDATEE QIQAAADDSI PTVWPLFWSF RIMVACGFIM LFVFGAAFIQ 420
  421 TCRQKIEQKQ WILKAALLSI PLPWIAIEAG WFVAEYGRQP WAVGEILPVH VAASALTAGE 480
  481 IWTSLFAILA LYTVFLIAEV YLMLKFARKG PSSLKTGRYH FEQNADSVED KVSRQVEA