YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28899011, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYPTQIILD WIANYFWPYV RISSMLMVMT VTGARFVSPR IRLYLGLAIT FAVMPAIPAV  60
   61 PQDIQLLSFR GFMTIAEQMI IGVAMGMVTQ FMIQTFVLLG QILGMQSSLG FASMVDPANG 120
  121 QNTPLLGQLF MFLTTMFFLA TDGHLKMLQL VVFSFKTLPI GSGTLTAVDF RDMAGWLGIM 180
  181 FKTALSMSLS GIIALLTINL SFGVMTRAAP QLNIFSLGFA FALMVGLLIC WYILAGLYSH 240
  241 YELYWALGEE QICSLIRLDC

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.66
Transmembrane Helix	15	36	0.82
Cytoplasmic	37	42	0.59
Transmembrane Helix	43	61	0.89
Non-Cytoplasmic	62	78	0.52
Transmembrane Helix	79	104	0.80
Cytoplasmic	105	122	0.43
Transmembrane Helix	123	145	0.81
Non-Cytoplasmic	146	182	0.51
Transmembrane Helix	183	203	0.90
Cytoplasmic	204	213	0.71
Transmembrane Helix	214	235	0.95
Non-Cytoplasmic	236	260	0.82