YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28899264, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.85
Transmembrane Helix	12	32	0.93
Non-Cytoplasmic	33	49	0.94
Transmembrane Helix	50	74	0.87
Cytoplasmic	75	84	0.89
Transmembrane Helix	85	106	0.91
Non-Cytoplasmic	107	134	0.95
Transmembrane Helix	135	156	0.88
Cytoplasmic	157	189	0.89
Transmembrane Helix	190	213	0.77
Non-Cytoplasmic	214	236	0.85
Transmembrane Helix	237	255	0.95
Cytoplasmic	256	286	0.96
Transmembrane Helix	287	308	0.92
Non-Cytoplasmic	309	326	0.93
Transmembrane Helix	327	350	0.90
Cytoplasmic	351	368	0.85
Transmembrane Helix	369	389	0.93
Non-Cytoplasmic	390	405	0.91
Transmembrane Helix	406	427	0.89
Cytoplasmic	428	464	0.90
Transmembrane Helix	465	482	0.78
Non-Cytoplasmic	483	513	0.81
Transmembrane Helix	514	533	0.95
Cytoplasmic	534	541	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDRHSLWKT SSGAITLLLV LPILAIFYTA IGETDNLFTH LMSTVMPTYI YNTVVLTIGV  60
   61 MGLSLIFGIP SAWLMAMCKL PTEKWLQWAL VLPLAMPGYI IGYIFTDWFD FAGPIQIFLR 120
  121 DVTGWGPGEY WFPDIRTLPG ATFVLSLVLY PYVYLLCRAA FMEQNVSLLQ SARLLKCSPW 180
  181 ESFWRISMPL VRPSIAVGLS LVAMETIGDF GTVSYFAVNT LTTAVYDTWL GYSNLNAAAK 240
  241 ISAIMLLIVV LLLSTERYSR RKQKLFQSQF NSHEDFRYEL SGWKKWAALV WCWGLVAVAF 300
  301 ILPLLQLIDY SITYFEQSWT PEFREYAWNS LVVSVIAAII GVAVALIVNF THRVNGKRES 360
  361 LAFMRLSSMG YAVPGTVLAI GVMVAVLFMD YRVNDIAKAM EWGRPGLIFS GSMFALIFAM 420
  421 VVRFSAVAIG SIESNLNKIS PSLDMASRTM GCTPNTMLWR VHFPLVKRGA LIAALLVFIE 480
  481 SMKELNASLL LRPFNFETLA TYVYNFASDE HLELAALPAV LLVLVGLIPL VVVNRSLEQN 540
  541 H