YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28807628, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSMSFLIST LFDLYIMVVI LRIWLQAARA DFYNPFSQFI VKATQPVIGP LRRVIPSIGN  60
   61 IDLATVLFAY VLCVLKFVAL ILIASNGSVS FSVDFLFLGL LSLLKAAGGL LFWVLLIRAI 120
  121 LSWVSQGRSP IEYVFHQLTE PMCAPIRRVL PAFGGLDLSV LVLFIGLQFA NFLMGDIIGP 180
  181 IWFQL

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.64
Transmembrane Helix	6	25	0.85
Cytoplasmic	26	60	0.74
Transmembrane Helix	61	84	0.86
Non-Cytoplasmic	85	94	0.71
Transmembrane Helix	95	117	0.87
Cytoplasmic	118	151	0.76
Transmembrane Helix	152	174	0.83
Non-Cytoplasmic	175	185	0.74