YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28808016
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKNNDQKN NDKNLSEETS SAPLAEKDAP KKDAESKKEA SKPVEPAKPA EPTKVEFEEK  60
   61 QGKRGVKLGT VAIILSIIFG GGLAYKLHEQ QADYQAQIAQ LQNQLEKAQA SMKQELNQVK 120
  121 EETIEKATTV THKAEVVLGQ QQKSIESLQL AVADVKGRRP NDWLLAEADY LVKLAGRKLF 180
  181 LEHDVESATQ LMESADQRIA ALNDPSLVKL RKAMANDITK LRTVPLIDRD GLVLRLTALQ 240
  241 QQVDKLPLAN ALLPEAQVVA QHEVSEDISN WQDNLMTSLK DFSENFITFR TRDGNVIPLL 300
  301 SPEQHFYLKE NIKAKLETAI KAVYQEQGEI YTTSLTTADK WAMAFFNQDD NAVKEFNKAL 360
  361 NQLSQQNIQV EYPAKLESQS QLSDVIRERL RREVTTMTGT GDK

Type	Start	End	Confidence
Cytoplasmic	1	65	0.80
Transmembrane Helix	66	85	0.76
Non-Cytoplasmic	86	403	0.99