YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29342773, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	305	0.93
Transmembrane Helix	306	326	0.91
Non-Cytoplasmic	327	348	0.84
Transmembrane Helix	349	371	0.87
Cytoplasmic	372	379	0.74
Transmembrane Helix	380	409	0.78
Non-Cytoplasmic	410	429	0.85
Transmembrane Helix	430	450	0.95
Cytoplasmic	451	461	0.78
Transmembrane Helix	462	484	0.85
Non-Cytoplasmic	485	510	0.78
Transmembrane Helix	511	532	0.87
Cytoplasmic	533	545	0.87
Transmembrane Helix	546	568	0.68
Non-Cytoplasmic	569	572	0.66
Transmembrane Helix	573	597	0.82
Cytoplasmic	598	605	0.51
Transmembrane Helix	606	632	0.79
Non-Cytoplasmic	633	640	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNINDLLIKD VMIMDLQATD KKGAIDEMVQ KLYDGGRISD IDTYKEGILK REAQTSTGLG  60
   61 DGIAMPHAKN SAVKEPTVLF AKSKKGVDYE ALDGQPTYLF FMIAAPEGAN DTHLQALAAL 120
  121 SRLLIDPEFV GKLKEAETPE AVQALFQAAE DQKEAEEKAE QEQTTPAPES NRKYIIAVTA 180
  181 CPTGIAHTYM AEDALKKKAK EMGVDIKVET NGSEGIKNRL TAEDIARADG VIVAADKKVE 240
  241 MNRFDGKKLV NRPVSDGIRK TEELINLAIS GEAPTFHGSD SAASDQEDSA EGSIGSRIYK 300
  301 DLMNGVSHML PFVIGGGIAI ALSFMIDQFI GVPQDQLANL GNYNDVASWF NQIGGAAFGF 360
  361 MLPVLAGFIA SSIGDRPGLV AGFAAGALAN AGGAGFLGAL IGGFLAGYVV VLLRKVFKGL 420
  421 PKSLDGIKTI LFYPVFGLII TGLLMLVINI PMKAINDALN HFLLGLDGTN AALLGALLAG 480
  481 MMAIDLGGPV NKAAYVFGTA TLASTVAEGG SVVMASVMAG GMVPPLAIFV ATRLFKNKFT 540
  541 KDQQDAGLTN IVMGLSFVTE GAIPFAAADP LRVIPSFVVG SAFTGALVGA FGIKLLAPHG 600
  601 GIFVVFLLSN PLLYLLFILI GAIISGIVYG LLKKPVEVPA