YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29376706, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.95
Transmembrane Helix	8	31	0.89
Cytoplasmic	32	50	0.89
Transmembrane Helix	51	70	0.95
Non-Cytoplasmic	71	76	0.74
Transmembrane Helix	77	97	0.89
Cytoplasmic	98	105	0.91
Transmembrane Helix	106	127	0.90
Non-Cytoplasmic	128	136	0.79
Transmembrane Helix	137	158	0.86
Cytoplasmic	159	163	0.80
Transmembrane Helix	164	185	0.90
Non-Cytoplasmic	186	189	0.83
Transmembrane Helix	190	209	0.94
Cytoplasmic	210	215	0.74
Transmembrane Helix	216	237	0.88
Non-Cytoplasmic	238	242	0.78
Transmembrane Helix	243	265	0.89
Cytoplasmic	266	289	0.87
Transmembrane Helix	290	313	0.84
Non-Cytoplasmic	314	319	0.66
Transmembrane Helix	320	343	0.85
Cytoplasmic	344	378	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLFIYEVLI RLFMTFILSL LLTPLVKLLA FRIGAYDAPG ERRINTKNMP TAGGLAIYIA  60
   61 FASSCLLIFR SIIPQDYIWP IILAGGMVVL TGLIDDIKEI TPMKKTIGIL LAALVIYFVA 120
  121 GIRIDFVTLP VVGMIDLRWF SLPLTLLWIL AITNAVNLID GLDGLASGVS IIGLTTIGIT 180
  181 GYFFLHAKTV YIPIVIFILV ASIAGFFPYN FYPAKIFLGD TGALFLGFMI AVMSLQGLKN 240
  241 ATFITVITPM VILGVPITDT VYAIIRRLLN KKPISSADKM HLHHRLLSLG FTHKGAVMTI 300
  301 YALALVFSFV SLLFSYSSTV ASILLIVFCL IGLELFIELI GLVGEGHQPL MYLLRILGNR 360
  361 EYRQEQMKKR LGKHSKRK