YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29377126, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.76
Transmembrane Helix	14	34	0.85
Non-Cytoplasmic	35	40	0.71
Transmembrane Helix	41	63	0.91
Cytoplasmic	64	68	0.69
Transmembrane Helix	69	87	0.83
Non-Cytoplasmic	88	94	0.62
Transmembrane Helix	95	117	0.90
Cytoplasmic	118	124	0.71
Transmembrane Helix	125	145	0.58
Non-Cytoplasmic	146	146	0.27
Transmembrane Helix	147	169	0.77
Cytoplasmic	170	216	0.64
Transmembrane Helix	217	237	0.85
Non-Cytoplasmic	238	248	0.62
Transmembrane Helix	249	271	0.72
Cytoplasmic	272	291	0.89
Transmembrane Helix	292	312	0.95
Non-Cytoplasmic	313	569	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKYQLPVAS WVESFTDWLT STFAGLFSFL QTIGQSVMDN ITALLTAVPP LVLIVLLTIA  60
   61 AFFISNKKIG LSLFTFIGLM FIYNQNLWND LMSTVTLVLL SSVISIIIGV PLGILMAKSE 120
  121 KAKSIITPIL DFMQTMPGFV YLIPAVAFFG IGMVPGVFAS VIFALPPTVR FTNLGIRQVP 180
  181 NELVEAADSY GSTGWQKLFK LELPLAKNTI MAGVNQTTML ALSMVVIASM IGAPGLGRGV 240
  241 LSALQRAQVG NGFVNGVALV ILAIIIDRFT QHLNNKKAAP KAAGATSKKK KYGIIAAVVV 300
  301 IVAGLVGASI FTTTNDKQIS LSYVEWDTEV ASTHVVAEVL KDMGYDVKTT PLDNAIMWES 360
  361 VAKGETDAMV GAWLPGTHAE QYKQYKDKLD DLGENLKGAK LGIVVPSYMD VDSIEDLSDQ 420
  421 AGKKITGIEP GAGVVAAAEK TKEAYPNLKD WSVETSSSGA MTVALGQAIK NNEDIVITGW 480
  481 SPHWMFAKYD LKYLADPKGT MGGEEAIHTM ARQGLKEDQP EAYKVLDNFH WTTKDMESVM 540
  541 LEINEGKDPQ EAARDWVDSH KDQVAEWKK