YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29541617, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNIIKFLLF VGVLVAGLSL AGCHSLRGGG ILHPEGTVSF EERQLFFDSL ALMLIVVIPV  60
   61 FIMSFTFIVR YRAGHKTSDY QPNWGHSVLL ETIWWGVPCG IIIILGIMTW TLTHKLDPYR 120
  121 RIDTPGKPLL IQAVALPWKW LFIYPEQNFA TVNYLELPKG RQIEFWLTND NVPMSAFFIP 180
  181 ELGSQIYTMA GMRTRLHLVA LKDGNYWGLD TQYNGDGFSD MRFQVKVVEP DELQHWFEKA 240
  241 KQSKEQLTLQ LYQKLIQPSA KDPVRYFSSV APNLFPQIIM KYKQTTGIPT HWAIPQSD

Type	Start	End	Confidence
Cytoplasmic	1	6	0.60
Transmembrane Helix	7	26	0.71
Non-Cytoplasmic	27	48	0.76
Transmembrane Helix	49	71	0.90
Cytoplasmic	72	91	0.78
Transmembrane Helix	92	112	0.94
Non-Cytoplasmic	113	298	0.76