YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29654659, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLQSKSRL SIIFNVSLVS AAVNTLLALF KIVVGIFGHS QALIADGVHS LSDLLTDGLV  60
   61 VVTGHMGAQS PDKEHPYGHR RIETIGSIII AVILIFVAIG IAFDTLEHLI HHAHLPLPTF 120
  121 PVIIVAVISI IANEGLFRYT LAKGNQINSD LLRTNAWHNR SDSLVSLIVL ISVIGSRFGI 180
  181 TYLDAIGAFI IAVLILRMGI KMIWNNGKEL IDTAVDDDTL KKITETISSV PDVLSIHQLR 240
  241 TRYHGGNIFV DVHIQVAPDI SVSEGHYVGE QVHLTLLKSV EHVADVTVHI DPENDATSMP 300
  301 SATLPSRQAI LQLLNDRWKH LPGFTDIRRT VLHYLNGKLH VEIYLPLTAL ADDKPSLEQK 360
  361 YRNAANLDII KKVTIYFE

Type	Start	End	Confidence
Cytoplasmic	1	11	0.90
Transmembrane Helix	12	34	0.89
Non-Cytoplasmic	35	46	0.74
Transmembrane Helix	47	68	0.72
Cytoplasmic	69	83	0.81
Transmembrane Helix	84	103	0.95
Non-Cytoplasmic	104	116	0.66
Transmembrane Helix	117	137	0.88
Cytoplasmic	138	156	0.79
Transmembrane Helix	157	175	0.76
Non-Cytoplasmic	176	179	0.50
Transmembrane Helix	180	200	0.85
Cytoplasmic	201	378	0.93