YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|229126069, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.87
Transmembrane Helix	12	31	0.92
Cytoplasmic	32	66	0.81
Transmembrane Helix	67	87	0.78
Non-Cytoplasmic	88	92	0.62
Transmembrane Helix	93	116	0.82
Cytoplasmic	117	136	0.93
Transmembrane Helix	137	159	0.90
Non-Cytoplasmic	160	171	0.84
Transmembrane Helix	172	195	0.89
Cytoplasmic	196	204	0.76
Transmembrane Helix	205	226	0.93
Non-Cytoplasmic	227	234	0.85
Transmembrane Helix	235	257	0.89
Cytoplasmic	258	295	0.90
Transmembrane Helix	296	317	0.89
Non-Cytoplasmic	318	355	0.93
Transmembrane Helix	356	377	0.92
Cytoplasmic	378	394	0.93
Transmembrane Helix	395	415	0.90
Non-Cytoplasmic	416	421	0.59
Transmembrane Helix	422	444	0.82
Cytoplasmic	445	487	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEAFVNWLN NIVWSPALVY LCLGVGLYFS IRTKFLQVRH VGEMVKLTFQ GEKSEAGVSS  60
   61 FQALALSLSG RVGTGNIAGV ATAVAFGGPG AVFWMWAVAF LGAGSAYVES TLAQIYKTKH 120
  121 QGQFRGGPAY YIEKGLGVKW YALVFVAATI LATGLLLPGV QANSIAVSLE TAFGINTTVS 180
  181 GAILVVVLAL IIFGGVKRIV NVAQVVVPFM AVGYILVACV IVAMNIEKLP EAFMLIIRSA 240
  241 FALEAAFGGI IGLAISWGVK RGIYSNEAGQ GTGPHAAAAA EVSHPAKQGL VQAFSVYIDT 300
  301 LFVCSATAFM MIITGMYNVF DASGKNFIVN KLNGAQPGPG YTQAAVESVF PGFGNGFVAI 360
  361 SLLFFAFTTI MAYYYIAETN IAYLNRDKDR PWMSMVLKFV FLGAVFYGCI KTAATAWALG 420
  421 DIGVGIMAWV NIIAILLLQK PALVALKDYE KQKKEGKDPV FDPGPLGIKN ADFWEHEYGK 480
  481 DKKEEVS