YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228657332, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.75
Transmembrane Helix	9	30	0.89
Cytoplasmic	31	36	0.72
Transmembrane Helix	37	56	0.77
Non-Cytoplasmic	57	63	0.79
Transmembrane Helix	64	86	0.88
Cytoplasmic	87	103	0.89
Transmembrane Helix	104	127	0.87
Non-Cytoplasmic	128	133	0.76
Transmembrane Helix	134	153	0.94
Cytoplasmic	154	162	0.89
Transmembrane Helix	163	186	0.91
Non-Cytoplasmic	187	194	0.79
Transmembrane Helix	195	213	0.96
Cytoplasmic	214	231	0.82
Transmembrane Helix	232	248	0.86
Non-Cytoplasmic	249	255	0.50
Transmembrane Helix	256	272	0.81
Cytoplasmic	273	281	0.71
Transmembrane Helix	282	304	0.88
Non-Cytoplasmic	305	310	0.70
Transmembrane Helix	311	332	0.87
Cytoplasmic	333	339	0.75
Transmembrane Helix	340	361	0.94
Non-Cytoplasmic	362	367	0.75
Transmembrane Helix	368	391	0.87
Cytoplasmic	392	615	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGENAMEHH TSVLSLMVVV AIAFFVPLLL QRFKLKALPV VVAEIIAGIF VGKSGFNIIE  60
   61 PDIWLQVLST LGFIFLMFLS GLEIDFSIFK QKGKKNTTNE PNTFQAASII FLFIFILSYA 120
  121 LSLLFVWLGF VDNAMFMTLI ISTISLGVVV PTLKENNLGK TAIGQIILLV AVIADLVTMI 180
  181 LLAVFVGLNS ESGQSMWLLL LLFGAGIVIY FVAKRFKNIP YLDSLKAGSV QIDTRAVFAL 240
  241 ILILVGLSES VGAENILGAF LAGVLVSLLS PNEDMVEKLD SIGYGFFIPI FFVMVGVNLE 300
  301 VWSIFKEPSS MLMIPILIVG LFISKLLPSL VLRKWYPRNI VLGSAILLTS TLSLVIAAAQ 360
  361 IGEKLEIISP SLSVSLILSA VITCIFAPIL FKKMFPKVET PKPKVAIIGA SRITLPLSLD 420
  421 LKREDYDVTL YMMRQNKIND EEATSHDFPI VKLDDITIAS LTEQTAFDAD RVVVATSDDE 480
  481 QNLLLAEHAK ELGVEHVIAS VEDPLLQEKA TQEHIAVFST INSTRILLRA LIDKPSLVRL 540
  541 ITTANETVRE VELRSNKYNG VALRRLPFLG DVLVIQIYRG NKALIPHGDT RLQHGDTLLV 600
  601 TGSKEHIDTL KNILE