YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228674947, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKVIAKRLL NAIPLLFVIS IISFLLIKLA PGDPVRNFVT PNMSPIDVER IRKSLGLDQP  60
   61 IYVQYFLWLK NILTGNFGYS LQNHRPVLEL ITERLPATIG LMGSSLLVSF VIAIPLGLFT 120
  121 GVKKNSFFDR IVNFISYVGI SMPVFWFALL LVYLFSLKLN LLPSMGMRTV GKDSVWDIVQ 180
  181 HGILPCMVLA FQNVSVYMRY IRSSTIQQLE EEYVQIQYAY GASKKTVLFN HVLRNVLIPI 240
  241 ITIFGLSIPS LVGGAFITET VFSWPGLGSL GVNAIFRFDY PIIMAITLLS SFMLILGNLI 300
  301 ADILYGVVDP RIRMRG

Type	Start	End	Confidence
Cytoplasmic	1	8	0.96
Transmembrane Helix	9	30	0.91
Non-Cytoplasmic	31	97	0.91
Transmembrane Helix	98	122	0.87
Cytoplasmic	123	133	0.79
Transmembrane Helix	134	157	0.91
Non-Cytoplasmic	158	177	0.84
Transmembrane Helix	178	197	0.83
Cytoplasmic	198	235	0.93
Transmembrane Helix	236	258	0.90
Non-Cytoplasmic	259	281	0.86
Transmembrane Helix	282	305	0.91
Cytoplasmic	306	316	0.88