YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228656100, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	31	0.97
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	154	0.99
Transmembrane Helix	155	175	0.94
Cytoplasmic	176	188	0.88
Transmembrane Helix	189	208	0.95
Non-Cytoplasmic	209	234	0.92
Transmembrane Helix	235	257	0.90
Cytoplasmic	258	264	0.91
Transmembrane Helix	265	284	0.92
Non-Cytoplasmic	285	301	0.84
Transmembrane Helix	302	322	0.95
Cytoplasmic	323	341	0.91
Transmembrane Helix	342	362	0.94
Non-Cytoplasmic	363	375	0.77
Transmembrane Helix	376	396	0.95
Cytoplasmic	397	407	0.89
Transmembrane Helix	408	428	0.90
Non-Cytoplasmic	429	549	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVKVMKRLG TLLLLVCVLI ILIPQSASAH AYVVKSNPTE NETLKKAPSV VKIEFDEDIQ  60
   61 VSRFNTLYVR DTSGKRVDLK DAHIDKKNKK LLEAGLKENL KNGLYSIQWK AISADGHPIQ 120
  121 GVIPFRIGLA EAETDDVQVE EMGYVPQIDM IMERGILYTS FSLFIGVLFF NLIMYKGNAT 180
  181 SVRSRSKNII WISLFGILIS LLFNLPLQAK INADVSWLEA FNPLLLKETL QLSVFGYVWI 240
  241 TQMVLISTLI IVTYFAVKHE KFSSFKVWSI PILLFIGLLV MKAFNSHAYG LKFKDIAVVM 300
  301 DFLHLFAASL WVGGLSSIIL LLRNEDNKWH MYWDMIKRFS PWATGAVIVI LITGLFNSTF 360
  361 FIPTIHSLFD TKYGLVLLTK ILLFIFMGIL GIIHYVKGRM RAQQGLGATV KVEFIIGIII 420
  421 FVIVAFMTNV QTPPMPPTGP FTESKQLDNG YEMTLNVSPN RVGQNIFHIT LKDENGQPVT 480
  481 DMEQIILTTQ SLDMNMGKGS FKVSAVSPGE YEAEGMYINM TGNWNIQVHG LTKSLDSFDT 540
  541 DYKFIVGGR