YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228656027, gi...
Protein type:	Transmembrane
Type Confidence:	0.55
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVITLMLVL FEVVFSVSIY RYYYNGIVQY IESHAKTSTR FFSEYNSLYF IRLQEYSGDI  60
   61 ISSFQLEGTE LQLIDRHGSV IQSSSGEKVE GKVNIPQSLL EGEMYNQVTT KGNKKQLEVL 120
  121 SPLIHQGQTI GVLKYTTVLT NVNKKIIEII TFTISVGIVI SGVVFLISRR LANSFVEPIE 180
  181 SIIQASSQIA EGTLKQKIKE DYPGELGDLA HSLNYMAYKI DKAEQMKNEF IASISHEIRT 240
  241 PLTGIKGWSE TLKTVDHLTE EEIKQGMGII SGETDRLIHL VEELLDFSRL QSNHFNLYKQ 300
  301 KVQLYDILEE TIWQLTPKSE EKEIQFITTI DRMELMGDRN RLKQVFLNIV QNAIKYSHKK 360
  361 STIHIEATKI EGQAVIKVRD EGIGIAKEHL PYIEQSFYQI NNHAAGAGIG LAIVKKMVEL 420
  421 HSGVLSVTSK EGIGTTILIK LPL

Type	Start	End	Confidence
Cytoplasmic	1	148	0.48
Transmembrane Helix	149	167	0.60
Non-Cytoplasmic	168	443	0.88