YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30020964, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMKHAFGPI ILACVLFFII ILIPSKSLVS LISDKKVEDA ATSLQKEKLQ SVFLQQKMLE  60
   61 NSQYLPMYGS SEFLRMDAYH PSNYFKVNPA GFTPFLIGTG GTQSLAHILN MTSTMDELEG 120
  121 KKVVFVLSPQ WFTKTGVSQG DFTNNFSKQQ AYHFIFNDKI NPEMKKQIAK RLLDYKVVQE 180
  181 DDILKNSLEG IVYNDSKHNI KAGLVKPLAY MHRNILDHRD LFNSLFKIEP MKEKTNIGLR 240
  241 SISWEDARKH AEQEGKAEST TNTFGIENPY YHKNNLKKKL KGLKNFRANE TYDESPEYDD 300
  301 LQIILELFKE KNVKPLFISV PVNGPWYDYT GFPKERREVY YKKVREQVEK AGYPVIDFSG 360
  361 HEYDKYFLKD TIHLGWKGWI YFDEAVQKFY SEK

Type	Start	End	Confidence
Signal Peptide	1	27	0.55
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	393	0.97