YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30021857, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNKINLQMQ NISFVIIMAL AVWLKTYLIT RFSFDLKIES STQELILFIS PLAASLAFVG  60
   61 LALFATGEKR NYIALCINFL LTIVLVGNVM FYDFYSDFVT LPVLGQTSNF GQLGGSIIEI 120
  121 LNYKIILAFV DIVFFFILLK KKSLVFKTER VTHSTRLLYF LLTIGVFFAN LHLAEKERLE 180
  181 LLTRSFDRVT LVKNLGLYTH QVYDLTLQVK AGSQKALADS SKLQETENYV KANQSEPNPN 240
  241 MFGAAKGKNV IVVTLESLQT FLIGASVNGQ EVTPFLNEFI NESYYFDNFF HQTGQGKTSD 300
  301 SEFLIDTSLY PLNRGAVFFT HGNNDYTATP EILRQQGYFT SVFHANNATF WNRNIMYSAL 360
  361 GYDRYYNELD YKITPETNLN WGLKDIEYFD QSVDILKTVN QPFYARFLTL TNHYPFTYDE 420
  421 DTKFIEPYNS GNGVFDRYIV TARYLDESIK KFIERLKAEG LYDDSIIVLY GDHYGISEKH 480
  481 NRAMAQFLEK DQITEFDTLN LQRTPLYIHI PGQTEGQTIS KPTGQIDMKP TILNLLGVDS 540
  541 TNDIRFGHDM FSDEYTGFVV LRDGSFVTDK YAYKNNTFYD RITGEIVDLP KKEAQALIKR 600
  601 AQNELRMSDK IIEGDLLRFS ESNKIKTGEV QTKIKETEK

Type	Start	End	Confidence
Cytoplasmic	1	9	0.89
Transmembrane Helix	10	29	0.92
Non-Cytoplasmic	30	44	0.90
Transmembrane Helix	45	65	0.95
Cytoplasmic	66	72	0.83
Transmembrane Helix	73	95	0.89
Non-Cytoplasmic	96	119	0.92
Transmembrane Helix	120	139	0.95
Cytoplasmic	140	154	0.94
Transmembrane Helix	155	174	0.93
Non-Cytoplasmic	175	639	0.99