YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|218899059, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVYADVVWL LNACIDFLLL LLTATVLKKK IKRWRLVLGA FIGSTIVIFA FTPFASMMTH  60
   61 PIMKLLYSLL IVYTAFGFTT FRNYAQTVFT FYFVTFMVGG GLIGTHFFLQ TNEMVNGLVQ 120
  121 SQSISYGDPI SWLFVIFGFP VIYYFSKKRI ESVEVTKIHY DQIVKVKIQL AEEELELAGL 180
  181 IDSGNQLYDP LTKTPVMIMH VSSLEHCLPS WLTEQIYSKT EIPQIPENDS GWATKLRLIP 240
  241 FRAVGVESQF LWAIKPDSVQ VDHEGSSIVV NKVLIGLNTQ QLSTNGEYQC IVHPKMLISQ 300
  301 KMVIA

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.91
Transmembrane Helix	7	27	0.91
Cytoplasmic	28	35	0.85
Transmembrane Helix	36	55	0.95
Non-Cytoplasmic	56	61	0.78
Transmembrane Helix	62	81	0.91
Cytoplasmic	82	87	0.85
Transmembrane Helix	88	109	0.93
Non-Cytoplasmic	110	128	0.85
Transmembrane Helix	129	146	0.93
Cytoplasmic	147	305	0.98