YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29897961, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.79
Transmembrane Helix	12	37	0.90
Cytoplasmic	38	45	0.82
Transmembrane Helix	46	64	0.93
Non-Cytoplasmic	65	226	0.95
Transmembrane Helix	227	251	0.90
Cytoplasmic	252	258	0.85
Transmembrane Helix	259	278	0.90
Non-Cytoplasmic	279	283	0.57
Transmembrane Helix	284	304	0.79
Cytoplasmic	305	319	0.62
Transmembrane Helix	320	345	0.82
Non-Cytoplasmic	346	355	0.72
Transmembrane Helix	356	376	0.89
Cytoplasmic	377	385	0.65
Transmembrane Helix	386	412	0.84
Non-Cytoplasmic	413	447	0.79
Transmembrane Helix	448	467	0.91
Cytoplasmic	468	474	0.93
Transmembrane Helix	475	494	0.97
Non-Cytoplasmic	495	773	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEQWGYVAI SFIIGIAIAF SSSLLLIVFC LFLNVFFCLY RTSRKTFIFC IVACFSSVIY  60
   61 TSYVQTWNKP LGESYGVTRG VIQNTPLVNG DRLSFQFEDQ NKNIVQLSYR IKSALEKKKM 120
  121 QQLYAGISCV FEGERKEPET ARNFHGFNYR DYLYKQHIHF TFEATYISEC YKTSLSLTQW 180
  181 ILLLRQQAIS KVTEMFPEQS GAFMNALLFG DRQQMTFEVE EQYQQFGLVH LLAISGSHIV 240
  241 LLMVIVYFIL LRSGATREVA TICLIVCIPL YMVLAGASPS VIRASITGVL MLIAFMCSIR 300
  301 LSSLDALSVT AICMLIYDPY LVFNIGFQFS FVGSFALLLS APLLLGSSNG VIRNSIYISI 360
  361 ISQLVSTPIL LYHFGYFSPY SILLNLLYVP FLSIIVLPCS IIILLCMPIV PFLAKGFADV 420
  421 LSIGLSMSND FLSYCESLPF TQLIFGETPL NLVAVYCASI VSILMVWERR APKKIVCIVA 480
  481 SVFLFISTCH YIYPYFRGSG SVTFIDVGQG DAILIRLPYD KGIYLIDTGG TLRVNKEEWQ 540
  541 QKKHEFSVGN DVLIPFLQKE GIKTIDKLIV THGDADHIGA AQELLSYIPV KEVVFGRKGK 600
  601 DAVLEKVVKK QALEKEMKIT EVGEGASWSV NEAEFFVLAP KGKEKSENNA SIVIWAKFGG 660
  661 LKWLFTGDLE EEGEKILVEA YPDLQVDVLK VAHHGSNTSS IEPFLNVMQP RVAIISVGKQ 720
  721 NRYGHPHKEV IERFEKMGSA IWRTDKQGAI SYVFKGENGT FKSKITYDKT HNR