YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29898804, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.88
Transmembrane Helix	31	51	0.92
Non-Cytoplasmic	52	71	0.85
Transmembrane Helix	72	93	0.90
Cytoplasmic	94	98	0.79
Transmembrane Helix	99	121	0.86
Non-Cytoplasmic	122	130	0.82
Transmembrane Helix	131	155	0.85
Cytoplasmic	156	170	0.88
Transmembrane Helix	171	195	0.85
Non-Cytoplasmic	196	215	0.78
Transmembrane Helix	216	239	0.85
Cytoplasmic	240	283	0.66
Transmembrane Helix	284	305	0.91
Non-Cytoplasmic	306	334	0.53
Transmembrane Helix	335	360	0.78
Cytoplasmic	361	368	0.45
Transmembrane Helix	369	387	0.62
Non-Cytoplasmic	388	391	0.52
Transmembrane Helix	392	414	0.78
Cytoplasmic	415	435	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKFIAFMEK YIVPVAGKIG SQRHLAAIRD GFIAVMPLIL VGALASLING FPSEAFQDFM  60
   61 KGLFGETWKQ VGGGMWTGSF AILALIIAFT TSYNLAKSYG VDGLSAGIIS FGALIILTPT 120
  121 TPKEGGLNLA WTGAQGLFVA IIVALLVTEV FRFFVQRNIT FKMPDGVPPA VLRSFAAIVP 180
  181 AFVILTVVAG IQLAVKLAGT SVHEFIFNTI QSPLQSLAGT LPSAIVIVLL VHLLWFFGLH 240
  241 GPNIVGGIIE PLYLPALEKN MKLFQGGTSA FDVPNIVTKP FFDTFVYLGG SGATLAFLVV 300
  301 VLLVAKSAQL RGVSRLSIGP GAFNINEPVI FGTPIILNPV LFLPFIITPI VLVITSYTAI 360
  361 SIGWGPKTVA MIPWATPPII SGYLVTGGHL SGAILQLFNF VIAMVIYYPF VVLCDRSVVR 420
  421 TEKAAAQGNN NSVPM