YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30023260, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.83
Transmembrane Helix	14	34	0.93
Cytoplasmic	35	39	0.78
Transmembrane Helix	40	60	0.91
Non-Cytoplasmic	61	70	0.74
Transmembrane Helix	71	95	0.83
Cytoplasmic	96	113	0.78
Transmembrane Helix	114	133	0.83
Non-Cytoplasmic	134	134	0.43
Transmembrane Helix	135	159	0.76
Cytoplasmic	160	165	0.48
Transmembrane Helix	166	186	0.83
Non-Cytoplasmic	187	193	0.87
Transmembrane Helix	194	214	0.90
Cytoplasmic	215	223	0.75
Transmembrane Helix	224	245	0.89
Non-Cytoplasmic	246	251	0.74
Transmembrane Helix	252	269	0.93
Cytoplasmic	270	300	0.96
Transmembrane Helix	301	322	0.87
Non-Cytoplasmic	323	369	0.92
Transmembrane Helix	370	389	0.94
Cytoplasmic	390	408	0.84
Transmembrane Helix	409	429	0.88
Non-Cytoplasmic	430	434	0.68
Transmembrane Helix	435	457	0.84
Cytoplasmic	458	528	0.56
Transmembrane Helix	529	548	0.92
Non-Cytoplasmic	549	553	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTWTQVYDP FGNIWISAAV ALIPIIFFFL ALAVFRMKGY VAGFITVVLT VLVALFAYKM  60
   61 PFTMAMAATG YGFLYGLWPI AWIIIMSVFL YKISVKTGQF DVIRASVLSI TNDHRLLVIL 120
  121 IGFSFGAFLE GAAGFGAPVA ITAALLAGLG LNPLYAAGLC LIANTAPVAF GAMGIPITVA 180
  181 GQVTGIDPHK IGQMAGHQLP FLSLFVPFFI VFLMDGFKGI RQTWPALFVA GSSFAITQFI 240
  241 TATFLGPELP DITSALVSLI SLALFLKVWQ PKEIYQSGQV NSEVAATTTA ASMPKLTFGK 300
  301 VVKAWSPFIV LTVMVVIWSQ SFFKALFTPG GALESLVFKF EIPGLHNLVM KAEPIVNKPT 360
  361 PYEAILKFDV LSATGTAILI ACIISMFILK MNVKDAVLTF KETLSELKMP ILSIGFVLGF 420
  421 AFIANYSGLS STLALALAGT GGLFPFFSPF LGWIGVFLTG SDTSANALFS NLQAITAQQV 480
  481 GVSEVLLVAA NTTGGVTGKM ISPQSIAIAC AAVGLAGKES DLFRFTVKHS LFFVIIVGIM 540
  541 TYVQAYYLTW MIP