YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228653005, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.98
Transmembrane Helix	12	36	0.86
Non-Cytoplasmic	37	47	0.90
Transmembrane Helix	48	69	0.93
Cytoplasmic	70	77	0.87
Transmembrane Helix	78	97	0.95
Non-Cytoplasmic	98	103	0.61
Transmembrane Helix	104	125	0.87
Cytoplasmic	126	135	0.86
Transmembrane Helix	136	158	0.89
Non-Cytoplasmic	159	163	0.76
Transmembrane Helix	164	183	0.89
Cytoplasmic	184	215	0.96
Transmembrane Helix	216	237	0.89
Non-Cytoplasmic	238	251	0.80
Transmembrane Helix	252	273	0.89
Cytoplasmic	274	279	0.89
Transmembrane Helix	280	298	0.94
Non-Cytoplasmic	299	303	0.80
Transmembrane Helix	304	326	0.90
Cytoplasmic	327	337	0.81
Transmembrane Helix	338	362	0.80
Non-Cytoplasmic	363	367	0.79
Transmembrane Helix	368	390	0.92
Cytoplasmic	391	399	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKVKEISKR KLLGIAGLGW LFDAMDVGML SFVMVALQKD WGLSTQEMGW IGSINSIGMA  60
   61 VGALIFGILS DKIGRKSVFI ITLLLFSIGS GLTALTTTLA MFLVLRFLIG MGLGGELPVA 120
  121 STLVSESVEA HERGKIVVLL ESFWAGGWLI AALISYFVIP KYGWEVAMVL SAIPALYALY 180
  181 LRWNLPDSPR FQKVEKRPSV IENIKSVWSG EYRKATIMLW ILWFCVVFSY YGMFLWLPSV 240
  241 MVLKGFSLIK SFQYVLIMTL AQLPGYFTAA WFIERLGRKF VLVTYLIGTA CSAYLFGVAD 300
  301 SLTVLIVAGM LLSFFNLGAW GALYAYTPEQ YPTVIRGTGA GMAAAFGRIG GILGPLLVGY 360
  361 LVASEASLSL IFTIFCGSIL IGVFAVIILG QETKQRELV