YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24111990, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDYEVLRFI WWLLVGVLLI GFAVTDGFDM GVGMLTRFLG RNDTERRIMI NSIAPHWDGN  60
   61 QVWLITAGGA LFAAWPMVYA AAFSGFYVAM ILVLASLFFR PVGFDYRSKI EETRWRNMWD 120
  121 WGIFIGSFVP PLVIGVAFGN LLQGVPFNVD EYLRLYYTGN FFQLLNPFGL LAGVVSVGMI 180
  181 ITQGATYLQM RTVGELHLRT RATAQVAALV TLVCFALAGV WVMYGIDGYV VKSTMDHYAA 240
  241 SNPLNKEVVR EAGAWLVNFN NTPILWAIPA LGVVLLLLTI LTARMDKAAW AFVFSSLTLA 300
  301 CIILTAGIAM FPFVMPSSTM MNASLTMWDA TSSQLTLNVM TWVAVVLVPI ILLYTAWCYW 360
  361 KMFGRITKED IERNTHSLY

Type	Start	End	Confidence
Cytoplasmic	1	8	0.61
Transmembrane Helix	9	30	0.88
Non-Cytoplasmic	31	77	0.62
Transmembrane Helix	78	99	0.89
Cytoplasmic	100	118	0.87
Transmembrane Helix	119	142	0.88
Non-Cytoplasmic	143	163	0.93
Transmembrane Helix	164	187	0.86
Cytoplasmic	188	202	0.90
Transmembrane Helix	203	225	0.89
Non-Cytoplasmic	226	262	0.97
Transmembrane Helix	263	283	0.93
Cytoplasmic	284	289	0.90
Transmembrane Helix	290	314	0.89
Non-Cytoplasmic	315	336	0.91
Transmembrane Helix	337	358	0.92
Cytoplasmic	359	379	0.94