YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74314433, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQRDYVRRS QPAPSRRKKS TSRKKQRNLP AVSPAMVAIA AAVLVTFIGG LYFITHHKKE  60
   61 ESETLQSQKV TGNGLPPKPE ERWRYIKELE SRQPGVRAPT EPSAGGEVKT PEQLTPEQRQ 120
  121 LLEQMQADMR QQPTQLVEVP WNEQTPEQRQ QTLQRQRQAQ QLAEQQRLAQ QSRTTEQSWQ 180
  181 QQTRTSQAAP VQAQPRQSKP ASTQQPYQDL LQTPAHTTAQ SKPQQAAPVA RAADAPKPTA 240
  241 EKKDERRWMV QCGSFRGAEQ AETVRAQLAF EGFDSKITTN NGWNRVVIGP VKGKENADST 300
  301 LNRLKMAGHT NCIRLAAGG

Type	Start	End	Confidence
Cytoplasmic	1	31	0.83
Transmembrane Helix	32	54	0.83
Non-Cytoplasmic	55	319	0.97