YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30043164, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEQEKTSAV VEETREAVDT TSQPVATEKK SKNNTALILS AVAIAIALAA GVGLYGWGKQ  60
   61 QAVNQTATSD ALANQLTALQ KAQESQKAEL EGIIKQQAAQ LKQANRQQET LAKQLDEVQQ 120
  121 KIATISGSDA KTWLLAQADF LVKLAGRKLW SDQDVTTSAA LLKSADASLA DMNDPSLITV 180
  181 RRAITDDIAS LSAVSQVDYD GIILKLNQLS NQVDNLRLAD NDSDGSPMDS DGEELSSSIS 240
  241 EWRINLQKSW QNFMDNFITI RRRDDTAVPL LAPNQDIYLR ENIRSRLLVA AQAVPRHQEE 300
  301 TYRQALENVS TWVRAYYDTD DATTKAFLDE VDQLSQQNIS MDLPETLQSQ AMLEKLMQTR 360
  361 VRNLLAQPAA GTTEAKPAPA PAPAPAPQGD TPAAAPQGE

Type	Start	End	Confidence
Cytoplasmic	1	35	0.97
Transmembrane Helix	36	58	0.93
Non-Cytoplasmic	59	399	0.99