YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|253775649, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSRRVIHH GLYFAVLGPL IGVLFLVLYI FFAKEPLVLL VIIQVLPLFL LLSITTGAIP  60
   61 ALLTGVMVAC LPEKIGSQKN YRCLAGGIGG VVITEIYCAV IVHIKGMASS ELFENILSGD 120
  121 SLVVRIIPAL LAGVVMSRII TRLPGLDISC PETDSLS

Type	Start	End	Confidence
Cytoplasmic	1	10	0.91
Transmembrane Helix	11	33	0.93
Non-Cytoplasmic	34	44	0.78
Transmembrane Helix	45	71	0.83
Cytoplasmic	72	82	0.88
Transmembrane Helix	83	104	0.93
Non-Cytoplasmic	105	120	0.85
Transmembrane Helix	121	141	0.83
Cytoplasmic	142	157	0.91