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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|32401139
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKTVVGASR MFWLMFFVPL LLAICPSEPA HALAPGSSRV ELFKRQSSKV PFEKDGKVTD  60
   61 RVVHSFRLPA LVNVDGVMVA IADARYETSN DNSLIDTVAK YSVDDGETWE TQIAIKNSRA 120
  121 SSVSRVVDPT VIVKGNKIYV LVGSYNSSRS YWTSHGDARD WDILLAVGEV TKSTAGGKIT 180
  181 ASIKWGSPVS LKKFFPAEME GMHTNQFLGG AGVAIVASNG NLVYPVQVTN KRKQVFSKIF 240
  241 YSEDDGKTWK FGKGRSDFGC SEPVALEWEG KLIINTRVDR KRRLVYESSD MGNTWVEAVG 300
  301 TLSRVWGPSP KSDQPGSQSS FTAVTIEGMR VMLFTHPLNF KGRWLRDRLN LWLTDNQRIY 360
  361 NVGQVSIGDE NSAYSSVLYK DDKLYCLHEI NSNEVYSLVF ARLVGELMII KSVLQSWKNW 420
  421 DSHLSSICTP ADPAASSSER GCGPAVTTVG LVGFLSGNAS QNVWEDAYRC VNASTANAER 480
  481 VRNGLKFAGV GGGALWPVSQ QGQNQRYRFA NHAFTLVASV TIHEAPRAAS PLLGASLDSS 540
  541 GGKKLLGLSY DEKHQWQPIY GSTPVTPTGS WETGKRYHVV LTMANKIGSV YIDGELLEGS 600
  601 GQTVVPDGRT PDISHFYVGG YGRSDMPTIS HVTVNNVLLY NRQLNAEEIK TLFLSQDLIG 660
  661 TEAHMDSRGD SSAHGTPSTP VDSSAHGTPS TPAGSSAHGT PSTPVDSSAH STPSTPVDSS 720
  721 AHGTPSTPVD SSAHSTPSTP ADSSAHGTPS TPVDSSAHST PSTPVDSSAH STPSTPVDSS 780
  781 AHGTPSTPVD SSAHSTPSTP AGSSAHGTPS TPAGSSAHGT PSTPVDSSAH GTPSTPVDSS 840
  841 AHSTPSTPAG SSANGTVLIL PDGVALSTFS GGGLLLCACA LLLHLFFMAV FF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle