YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG8_NEUCR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	125	0.59
Transmembrane Helix	126	150	0.80
Non-Cytoplasmic	151	177	0.57
Transmembrane Helix	178	207	0.63
Cytoplasmic	208	221	0.65
Transmembrane Helix	222	244	0.88
Non-Cytoplasmic	245	262	0.63
Transmembrane Helix	263	283	0.64
Cytoplasmic	284	316	0.73
Transmembrane Helix	317	339	0.68
Non-Cytoplasmic	340	344	0.63
Transmembrane Helix	345	366	0.75
Cytoplasmic	367	386	0.64
Transmembrane Helix	387	407	0.88
Non-Cytoplasmic	408	414	0.72
Transmembrane Helix	415	433	0.92
Cytoplasmic	434	446	0.88
Transmembrane Helix	447	470	0.88
Non-Cytoplasmic	471	480	0.80
Transmembrane Helix	481	502	0.91
Cytoplasmic	503	504	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEIYPSLVQ CAIVATAFKV LLFPAYKSTD FEVHRNWLAI THSLPLWEWY YEKTSEWTLD  60
   61 YPPFFAYFEW IMSQVARLAD PAMIWVHNLE YDSWQTVYFQ RWTVIVTELV LLYALQMYKG 120
  121 ILSGSLRAAH AAAVSILLSP GLLIIDHIHF QYNGVMYGIL IASLVLAKKK SSLLASGLVF 180
  181 AALLCMKHIY LYLAPAYFVY LLRVYCLPPK LSPRSIFRIQ FFNCVKLGGG IAAIFAAAFG 240
  241 PFALKNQIPQ IFSRLFPFSR GLCHAYWAPN VWALYSFMDR LLISLAPRIG LPIKADALNS 300
  301 VTRGLVGDTS FAVLPDITPR MCFVLTLLFQ AIPLIKLFMR PTWEGFIGGV TLCGYASFLF 360
  361 GWHVHEKAIL LVIIPFSLIA LKDRRYLGAF RPLAVAGHVS LFPLIFTPAE FPIKTVYTIF 420
  421 WLVLFLMAFD RLAPAPTRQR LFLFDRFSTA YITVSIPLIF YCSLMHGIIF GKSYEFLPLM 480
  481 FTSSYSAIGV VGSWLGFMVV YFTE