YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33573136
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEESDLEKS EAASPRRLEK AREEGQIARS RELGTFMMLA AGVVGVWLSG SMLYQGLTGV  60
   61 LRRGLGFEPR VAQDPGVMVE QAVHGAGRAL LTVLPMFGML AVVAVLSAVL LGGFVFSTKP 120
  121 LEPNFSKLSL WSGIKRMFSA QTVVELVKAL AKAALVGGVA VWVIWHYHDD MLGLMHVAPS 180
  181 AALTSAMSLV ALCSALIVGS LLFVVLLDVP WQIWNHLKKL RMTKEDVRQE HKESEGDPHV 240
  241 KGRIRQQQRA MARRRMMSEV PGADVVVTNP THYAVALKYA DGAAGAPRVV AKGTGLIAAR 300
  301 IRELAAEHRI PTLEAPPLAR ALHQHVELGQ EIPTALYTAV AEVLAWVFQL RSWRPGLGRE 360
  361 PQAPTALAVP AELDPHSPPA TQGA

Type	Start	End	Confidence
Cytoplasmic	1	32	0.98
Transmembrane Helix	33	57	0.84
Non-Cytoplasmic	58	93	0.94
Transmembrane Helix	94	117	0.89
Cytoplasmic	118	145	0.90
Transmembrane Helix	146	166	0.91
Non-Cytoplasmic	167	185	0.82
Transmembrane Helix	186	209	0.90
Cytoplasmic	210	384	0.95