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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|85087076
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.40
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGRPPPGA PSSAQHDDLL LDFGNEQPYY GGGQRSTLND DDLLRLHSDD AQGAAQPRPS  60
   61 VSYDDFVGSG QTTQPTATRP IQPAPGATGG GGPISPYPDS RSLDRHFSQT SDLGNYQRYA 120
  121 EDSDDYPDES TTSYYQHGGA IPPDSAAARD SARARNSVLS MGGGLIGRAK NMLGMGPEGY 180
  181 SEMDLPLTDP RATARVDHSH EPPPPQKPAK KFDFKFGFGG GKPDPATLGP RIIHLNNPPA 240
  241 NSLNKYVDNH VSTAKYNFAT FLPKFLFEQF SKFANIFFLF TAGLQQIPGL SPTNRYTTIG 300
  301 PLAVVLLVSA GKEMVEDYRR KQADKALNMS KARILRGSTF EETKWINVSV GDIIRVESEE 360
  361 SFPADLVLLA SSEPEGLCYI ETANLDGETN LKIKQALPET SSMVSSSELS RLGGRIRSEQ 420
  421 PNSSLYTYEA TLTMQAGGGE KELPLNPEQL LLRGATLRNT PWVHGVVVFT GHETKLMRNA 480
  481 TAAPIKRTKV ERQLNTLVLF LVGILLIFSV VSTVGDLIQR KVEGEEGLAY LFLDPMNGAS 540
  541 AVARIFIKDM VTYWVLFSAL VPISLFVTIE MVKYWHGILI NDDLDMYYDV NDTPANCRTS 600
  601 SLVEELGMVE FVFSDKTGTL TCNMMEYRQC SIAGIMYADK VPEDRIPSGE DGEDGIHDFK 660
  661 QLQKNLESHQ SAQVIDQFLT LLAICHTVIP EQAEDGSIKY QAASPDEGAL VDGAVQMGYR 720
  721 FVARKPRAVI IEANGQQLEY ELLAVCEFNS TRKRMSTIYR CPDGKVRCYC KGADTVILER 780
  781 LNDQNPHVDA TLRHLEEYAS EGLRTLCLAM REIPEHEFQE WMKVYETAQT TIGGNRADEL 840
  841 DKAAELIEHD FYLLGATAIE DRLQDGVPET IHTLQEAGIK VWVLTGDRQE TAINIGMSCK 900
  901 LLSEDMMLLI VNEESAEATR DNLQKKLDAI RNQGDATIEM ETLALVIDGK SLTYALEKDM 960
  961 EKLFLDLAIM CKAVICCRVS PLQKALVVKL VKKYQKESIL LAIGDGANDV SMIQAAHIGV1020
 1021 GISGMEGLQA ARSADVSIAQ FRYLRKLLLV HGAWSYHRVS KTILFSFYKN ICLYLTQFWY1080
 1081 TFQNVFSGEV IYESWTLSFY NVFFTVLPPL ALGILDQFVS ARLLDRYPQL YNLGQRNTFF1140
 1141 KIRVFGEWII NAVYHSIILY VGGCLFWLND GPQGDGFPGG KWVWGTAMYG AVLLTVLGKA1200
 1201 ALVTNNWTKY HVIAIPGSMA FWILFVAVYG EVAPKLNISV EYFGVIPRLF TSPIFWIQMP1260
 1261 TLAILCLLRD FAWKFSKRLW RPEAYHHVQE IQKYNIQDYR PRMEQFQKAI RKVRQVQRMR1320
 1321 KQRGYAFSQA DESQTRVLQA YDTTQHRGRY GEMASSRPNQ 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle