YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33632269, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRSQRAVRW LQPGLVVKRW VLTSGLGLMM ALLGAAVWAD LKPIYWILET LSWFLSTITT  60
   61 VLPREITGPL VLIVGTSLVL WGQSRSFGAI QQALAPDKDT VLVDALRTQS RLNRGPNIVA 120
  121 IGGGTGLSTL LSGLKRYSSH ITAIVTVADD GGSSGRLRRE LGVLPPGDIR NCLAALSTEE 180
  181 PLLTRLFQYR FTAGSGLEGH SFGNLFLSAL TAITGNLETA ITASSRVLAV QGQVVPATNV 240
  241 DVRLWAELEN GDRIEGESNI GHAPSPIVRL GCLPERPPAL PRALEAIASA DLILLGPGSL 300
  301 YTSLLPNLLV PELVSAIRRS RAPRLYICNL MTQPGETDGL DVRGHLRAIE AQLASLGIDQ 360
  361 RLFTAVLAQD DLDDSPLVEH YRSRGAQPVV CDADDLRSDG YDVTQAPLQG ARPTATLRHD 420
  421 SRSLALAVMR FYRGHRRERD Q

Type	Start	End	Confidence
Cytoplasmic	1	19	0.62
Transmembrane Helix	20	39	0.64
Non-Cytoplasmic	40	60	0.84
Transmembrane Helix	61	82	0.54
Cytoplasmic	83	114	0.56
Transmembrane Helix	115	131	0.35
Non-Cytoplasmic	132	441	0.77