YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34558160
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.84
Transmembrane Helix	7	30	0.88
Non-Cytoplasmic	31	49	0.79
Transmembrane Helix	50	70	0.85
Cytoplasmic	71	84	0.78
Transmembrane Helix	85	107	0.87
Non-Cytoplasmic	108	112	0.64
Transmembrane Helix	113	131	0.86
Cytoplasmic	132	137	0.75
Transmembrane Helix	138	161	0.86
Non-Cytoplasmic	162	169	0.83
Transmembrane Helix	170	192	0.93
Cytoplasmic	193	212	0.96
Transmembrane Helix	213	234	0.91
Non-Cytoplasmic	235	239	0.76
Transmembrane Helix	240	256	0.90
Cytoplasmic	257	270	0.72
Transmembrane Helix	271	292	0.89
Non-Cytoplasmic	293	309	0.80
Transmembrane Helix	310	329	0.88
Cytoplasmic	330	334	0.74
Transmembrane Helix	335	360	0.75
Non-Cytoplasmic	361	366	0.71
Transmembrane Helix	367	389	0.80
Cytoplasmic	390	396	0.72
Transmembrane Helix	397	420	0.86
Non-Cytoplasmic	421	428	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIAFLFIGL FGLMLIGVPV AVALGTSTVL SMLLFTELDP MSIPQLVFDG INKFSLMAIP  60
   61 MFILAGNLLS KGSSARRIID FAKSMVGHLP GGLPMSAIFA CIIFAAVSGS SPATVVAIGS 120
  121 IMFAAIKDAG YPASYAVGGI TTAGSLGILI PPSIVMIVYG VTAEESIGKL FMAGVIPGLM 180
  181 IGAMMMLQTY WGAKRLGFKA TEPAPFRERL QKLGKAFWAL MVIFVVIGGI YGGIFTPTEA 240
  241 AAVSAVYAFV ISYFVYKDIQ LKDLYKVFLE SAMTTSMIFF IIANAVVFAH FLTSEQIPQT 300
  301 IAQTILDHNV GKIGFLILVN IILFIMGQFM EPSSVVMIMV PLLLPIATEL GIDPIHFGII 360
  361 MVVNMELGMI TPPVGLNLFV ASGLTGMSLK DVVIASLPWT ITIFIGLILV TYVPAISLWL 420
  421 PNLMFGTY