YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|35211496, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPPAERLRE FRWRVFNIVM AIVGLYVVGV IGYMVIEGWD FFDALYMTVI TLAGVGYGET  60
   61 RPLNTDGRIF TIVLIVLGVA TLGILVGRIV QALGEGYLQE GLKYTRQKRM LSQLKDHFII 120
  121 CGYGRMGSRI CEELTISHAQ FVVVEADPRA ATIARSKGYR IIEGDASADQ TLVEAGIERA 180
  181 CSVICALTSD ADNLFIVLSA RNLNPKVRTI TRASSEEAAV KLRRGGADEV VSPYTAGARR 240
  241 MAAIALRPGV VDFIETAFSG TGGGSLIVEE VKLDERSCPF VGMSLQQINL RNRSGGLVVA 300
  301 IRRADGTLVG SPTGETILAQ GDILFCLGTD AQLRTLSEAL LPVKTG

Type	Start	End	Confidence
Cytoplasmic	1	14	0.91
Transmembrane Helix	15	36	0.93
Non-Cytoplasmic	37	41	0.85
Transmembrane Helix	42	60	0.81
Cytoplasmic	61	68	0.75
Transmembrane Helix	69	90	0.92
Non-Cytoplasmic	91	346	0.88