YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37523733, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALRVSKLT GQFGKWLYPG MRVKRWLGMV VIGTIFVSLG LAIWVDLRPI FYSSRFLWGL  60
   61 VQGLADLLPN DISGPLVLAV GLLCVVMGLR LTLSSITEVL VPEGQDNLVE RLYQRRRLSR 120
  121 GPKIVAIGGG TGLSTLLRGL KRYSTNITAV VTVADDGGSS GRLRQEFGVL PPGDLRNCLA 180
  181 ALADEEKLLT ELFQYRFKLG EGLAGHSFGN LFLTAMAEIT GDLEKGVEAS SKVLAIRGRV 240
  241 LPATLDNMTL WADLEDGRHI EGESNISHAG GQIVRIGCTP VAPRALPQVA AAIREAELVI 300
  301 IGPGSLYTSI APNLLVPEIA QALKASSAHK IYICNVMTQP GESDGYSVSD HVRALEVAAG 360
  361 GPFFEAVMVQ KDTPTRNLDR YAKQQSQPVT VDRDNLALMG LQIVLANVMD EDHASGTIRH 420
  421 SSQRLGRALL HWYKRRQQNR QQRVS

Type	Start	End	Confidence
Cytoplasmic	1	25	0.92
Transmembrane Helix	26	45	0.96
Non-Cytoplasmic	46	71	0.84
Transmembrane Helix	72	93	0.82
Cytoplasmic	94	120	0.87
Transmembrane Helix	121	140	0.62
Non-Cytoplasmic	141	445	0.77