YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37676574, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.89
Transmembrane Helix	21	40	0.76
Non-Cytoplasmic	41	44	0.61
Transmembrane Helix	45	64	0.87
Cytoplasmic	65	72	0.65
Transmembrane Helix	73	95	0.90
Non-Cytoplasmic	96	118	0.70
Transmembrane Helix	119	142	0.74
Cytoplasmic	143	157	0.65
Transmembrane Helix	158	181	0.75
Non-Cytoplasmic	182	189	0.87
Transmembrane Helix	190	212	0.91
Cytoplasmic	213	259	0.96
Transmembrane Helix	260	281	0.90
Non-Cytoplasmic	282	288	0.86
Transmembrane Helix	289	310	0.93
Cytoplasmic	311	319	0.92
Transmembrane Helix	320	340	0.93
Non-Cytoplasmic	341	361	0.91
Transmembrane Helix	362	382	0.90
Cytoplasmic	383	389	0.76
Transmembrane Helix	390	413	0.86
Non-Cytoplasmic	414	442	0.91
Transmembrane Helix	443	462	0.94
Cytoplasmic	463	467	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRVYYFFCI TRENEITNIS LRINNMLYLE FLFLLLMLYI GSRYGGIGLG VVSGIGLVIE  60
   61 VFVFKMPPTS PPVTVMLIIL AVVTCASILE AAGGLKYMLQ VAERMLRKNP KRVTLIAPFV 120
  121 TYTMTFMLGT GHAVYSIMPI IGDVALKNGI RPERPMAAAS VASQIAITAS PISAAVVYYL 180
  181 AQLSDINHEI TLLSILLVTV PATLFGTLLM SLYSMKRGKE LEDDPEYQAR LKDPVWREKI 240
  241 LNTTATSLDE HLPAAARNSV LLFILSILTI VVIAMIPEVR IIGEGTKPIS MAVVIQMMML 300
  301 CFGGIILLAT KTDPRSVPNG VVFKSGMVAA IAIFGIAWMS DTYFQYAMPQ FKSGIVEMVN 360
  361 NYPWTFALAL FIVSVVVNSQ AAVARMMLPV GLGLGLEPAL LVGLMPALYG YFFIPNYPSD 420
  421 IATVNFDNTG TTKIGKWYFN HSFMSVGLIG VIGACCLGYL LGQMIIG