YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37680965, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACLSYFCPH HKENDDYMDA LQYYPWLYIG LASLFGLLVG SFLNVVIYRL PKIMELEWRQ  60
   61 ECAESFPEYN ITPPTETLTL STPRSSCPSC HTPIRVRDNI PVFSWLALRG KCHHCQTKIS 120
  121 ARYPFVEALS AFLCGLVAWK FGYAPITVAL IGFTLVLIAA TFIDLDTMLL PDQLTLPLTW 180
  181 AGIALALLEI SPVSLQDSVI GAMAGYLCLW SVYHLFRLLT GKEGMGYGDF KLLAALGAWL 240
  241 GWQYLPMIIL LSSVVGLIFG LIQLRLQKQG IEMAFPFGPY LAIAGWVALM WGDSLMSWYL 300
  301 NYLIGA

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.97
Transmembrane Helix	26	48	0.93
Cytoplasmic	49	140	0.91
Transmembrane Helix	141	163	0.87
Non-Cytoplasmic	164	172	0.55
Transmembrane Helix	173	191	0.82
Cytoplasmic	192	198	0.52
Transmembrane Helix	199	218	0.81
Non-Cytoplasmic	219	241	0.75
Transmembrane Helix	242	262	0.93
Cytoplasmic	263	272	0.69
Transmembrane Helix	273	295	0.82
Non-Cytoplasmic	296	306	0.76