YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39996467, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARQRTSPME EMILVATKLP WWACLLLALV SYAVLHVMAM RPVMPATVVP GQMGDAVARG  60
   61 LITTLAMFGQ YVMPFAFALA ALLSAVNEYR NKKSGTFVPN HLDVAPPSRK RVSTEASVPM 120
  121 PTSGNSGKMN RDFDHMLPGG EEELAIENPQ PVPLPQQWGM SVIQMMEWKR FEIVTREFLK 180
  181 MTGYDAHETK VGADGGVDIR VTKPSNDTFQ GIVQCKAWNS YRVGVKPVRE LYGVMAAEKA 240
  241 TAGMVITSGT FTAEAEEFAK GKVKLISGVN FLELIRKLPP EKQQRLLDIA LEGDYQTPTC 300
  301 PQCDLKMTLR ENKSGKNPGS KFWGCVRYPH CRQTLVYTGN GSRVRLPS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.90
Transmembrane Helix	21	40	0.95
Non-Cytoplasmic	41	60	0.91
Transmembrane Helix	61	83	0.87
Cytoplasmic	84	348	0.96