YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39984599, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLREERFERA EKVIHLGFWV NAVLMVMKLA AGHFGGSEAV FADGVESGCD FVALLFTMVA  60
   61 LRVGRKPFDA RHPYGHGKAE NVAAFVIALV IGGAGMFILV QSVRTIMSRS WQTPDLIAVA 120
  121 AALLTIVIKE GLYRYSVAAG RKLDSPALQA VAMDHRKDAL TSVGTLVGVV GAYAGFGIMD 180
  181 PLAAGLTSLF IFKIGYETFR SALHDLMDGQ PPGDFIRAVT DLAEGVEHVH EIRGRRSGQY 240
  241 IIIDLKLDMD PEMTVKQSHD IATCVKKLIF ERFPNVGDVM IHINPHDEEH EDLIRL

Type	Start	End	Confidence
Cytoplasmic	1	12	0.97
Transmembrane Helix	13	32	0.93
Non-Cytoplasmic	33	43	0.66
Transmembrane Helix	44	63	0.80
Cytoplasmic	64	81	0.80
Transmembrane Helix	82	103	0.91
Non-Cytoplasmic	104	115	0.69
Transmembrane Helix	116	133	0.76
Cytoplasmic	134	158	0.70
Transmembrane Helix	159	184	0.67
Non-Cytoplasmic	185	296	0.60