YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41396047, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.98
Transmembrane Helix	30	50	0.94
Non-Cytoplasmic	51	67	0.78
Transmembrane Helix	68	88	0.91
Cytoplasmic	89	95	0.89
Transmembrane Helix	96	118	0.89
Non-Cytoplasmic	119	124	0.75
Transmembrane Helix	125	146	0.90
Cytoplasmic	147	155	0.80
Transmembrane Helix	156	176	0.94
Non-Cytoplasmic	177	184	0.84
Transmembrane Helix	185	207	0.91
Cytoplasmic	208	216	0.73
Transmembrane Helix	217	236	0.94
Non-Cytoplasmic	237	244	0.77
Transmembrane Helix	245	265	0.93
Cytoplasmic	266	277	0.89
Transmembrane Helix	278	302	0.86
Non-Cytoplasmic	303	321	0.81
Transmembrane Helix	322	342	0.82
Cytoplasmic	343	349	0.72
Transmembrane Helix	350	369	0.91
Non-Cytoplasmic	370	378	0.72
Transmembrane Helix	379	400	0.92
Cytoplasmic	401	417	0.82
Transmembrane Helix	418	439	0.90
Non-Cytoplasmic	440	484	0.75
Transmembrane Helix	485	503	0.94
Cytoplasmic	504	689	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTPRAAVNA PARADTGSGG ERISPQRRNL IFVAIVLGML LAALDQTIVA TALPTIVANL  60
   61 GDAGHQSWVV TSYLLASTIV TALVGKLGDL YGRKRVFQAA VLFFVAGSVL CGLAQSMAML 120
  121 VGARALQGIG GGGITVTASA LIGEVVPLRE RGRYQGILGA VFGVTTVIGP LLGGYFTDYL 180
  181 SWRWAFWVNV PVSVIVIFVA AAAIPALAAS AKPVIDYAGI VFVGLGAAGL TLATSWGGSR 240
  241 YPWGSPTITG LFAAAAVALG VFVVVERRAA EPILPVRLFA SPVFTVCCVL SFVVGFAMLG 300
  301 AMTFLPTYMQ YVDGVSATTS GLRTLPMVVG MLFTSTGSGT IVGRTGRYKI FPVAGTALMA 360
  361 LAFLLMSRMQ PSTPAVIQSL YLFILGAGIG LSMQVLILIV QNTSDFEDLG VATSGVRFFR 420
  421 TIGSSFGAAI FGSLFVNFLN RRIGPALAAS GAPPGAVSSP GALHRQPHEV AAPIVAAYAE 480
  481 SLTEVFFWAA PVALVGFVLA LFLREIPLRD IHDSTVDLGD AFGMPTTETP DQMLENAIAR 540
  541 MLRGETGMRL RSIAMRPDCR LDVAGLWGVL RINRYTQMYG AARLTDMAEY LRIPFEVLEP 600
  601 TFSRLVTAGY AGSDGDRLWL TPAGAQQVGY VHSLLLAWLV DKLGRSPGFE GRPDRQAVQA 660
  661 ALERVAYRVL AQRDWHDEQP TAAITAAAR