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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|41397447, gi|...
Protein type: Transmembrane
Type Confidence: 0.56
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVTIVTSA SNVRNAARFR AGRHPALRRC GPIWAVVWLA VYLKSLTLKG FKSFASPTTL  60
   61 RFEPGITAVV GPNGSGKSNV VDALAWVMGE QGAKTLRGGK MEDVIFAGTS SRAPLGRAEV 120
  121 TVTIDNSDNA LPIEYSEVSI TRRMFRDGAS EYEINGSSCR LMDVQELLSD SGIGREMHVI 180
  181 VGQGKLDEIL QSRPEDRRAF IEEAAGVLKH RKRKEKALRK LDAMSANLAR LTDLTTELRR 240
  241 QLKPLGRQAE VARRAQTIQA DLRDARLRLA ADDLVNRRGE REAIFEAEAA MRREHDEASA 300
  301 RLAVASDELA AHEKALGELS GRAESVQQTW FALSALAERV AATVRIASER AQHLDLEPVT 360
  361 TGDTDPDALE AEAERVAAAE QQLLAELATA RSRLETARAE LAEREREAAE ADRAHMAAVR 420
  421 AEADRREGLA RLAGQVETMR ARVESIDDSV ARLSERIEAA AARAQQAKAE FETVQGRVGE 480
  481 LDQGEVGLDE HHERTVAALR LADERVAELQ AAERDAERKV ASLRARIDAL AVGLERKDGT 540
  541 AWLTENHSGA GILGPMAKLV KVRSGYEAAV AAVLGSAADA LAADGLGAAR SALGALKQAD 600
  601 GGRAALVLGD WPADPPAPQP APAGALWALD LIDAPERLRG AITAMLSGVA VVDDLDRALA 660
  661 LVAEHPRLRA VTLDGDLVGA GWVSGGSDRK LSTLEVTSEI DKAGAELAAA EAQVAQLSAA 720
  721 LSGALAEQAA RQDSAEQALA ALNESDSAIS GMYEQLGRLG QEARTSEDEW SRLLRQREEL 780
  781 EAGRTQTVAE VTELENRLRN AQETPQEPAA EPVNRQQIAA ATDAARSAEV EARLAVRTAE 840
  841 ERANAVRGRA DSLRRAAAAE REARVRAQQA REARLRAAAV AAAVADSGRL LATRLNAVVA 900
  901 AASRIRDALA AERQQRATAM AAVRDEVNAL SARVAALTDS LHSDEVANAQ AALRIEQLEQ 960
  961 MVLEQFGMAP ADLIAEYGPH IALPPSELEM AEYEQAKERG EQVFAPAPIP FDRPTQERRA1020
 1021 KRAERELAEL GRVNPLALEE FAALEERYNF LSTQLEDVKA ARKDLLGVVD EVDARILQVF1080
 1081 SEAYTDVERE FSDVFGVLFP GGEGRLRLTD PSNMLTTGIE VEARPPGKKI TRLSLLSGGE1140
 1141 KALTAVAMLV AIFRARPSPF YIMDEVEAAL DDTNLRRLIS LFELLRARSQ LIIITHQKPT1200
 1201 MEVADALYGV TMQGDGITAV ISQRMRGQQV DQLVTT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle