YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PAM17_NEUCR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSSTATTML RAGVSRSSGA LQPMLLRSAA CPCSPFSMNT KLSQPTSVRP LSTSPSALVL  60
   61 RFRAQQQAQL AQQQLRRASS SSSSSSSSTR PRSDAELDAN AAEAAAAAQS AAHAGEPVLD 120
  121 WNTFFKLRKT RRRVQLAFSV IMTLITSGAG GAVLSTGVAD AMVAQVPLEP MFAVGLMTAS 180
  181 FGALGWLMGP AMGGMVFNAL KSKYRGQMEI KEGQFFARIK KHRVDPSASS MGNPVPDFYG 240
  241 EKISSVAGYR QWLKDQRAFN KKRTTFV

Type	Start	End	Confidence
Cytoplasmic	1	135	0.98
Transmembrane Helix	136	158	0.92
Non-Cytoplasmic	159	175	0.82
Transmembrane Helix	176	198	0.88
Cytoplasmic	199	267	0.98