YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42736431, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	22	0.99
Transmembrane Helix	23	45	0.90
Non-Cytoplasmic	46	81	0.93
Transmembrane Helix	82	103	0.95
Cytoplasmic	104	112	0.92
Transmembrane Helix	113	137	0.86
Non-Cytoplasmic	138	163	0.84
Transmembrane Helix	164	184	0.80
Cytoplasmic	185	211	0.80
Transmembrane Helix	212	231	0.87
Non-Cytoplasmic	232	260	0.91
Transmembrane Helix	261	280	0.92
Cytoplasmic	281	309	0.94
Transmembrane Helix	310	334	0.91
Non-Cytoplasmic	335	365	0.92
Transmembrane Helix	366	387	0.93
Cytoplasmic	388	399	0.94
Transmembrane Helix	400	423	0.92
Non-Cytoplasmic	424	441	0.92
Transmembrane Helix	442	464	0.89
Cytoplasmic	465	506	0.85
Transmembrane Helix	507	527	0.76
Non-Cytoplasmic	528	544	0.92
Transmembrane Helix	545	566	0.93
Cytoplasmic	567	583	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLENLKVEST KKKIKRRIGK EEWIQRLLII GMILAFLIML VLPLLQLFTQ AFYDKDGAFI  60
   61 GVANFSKYFT TPTLVQSLQN TIWISGVTTI IAVALAFAYA YAIARTNVFG KRVFQYVALL 120
  121 PLFAPTMMHG IALTYLFGNQ GLVTKGMFGL FEGIQIPLYG PVGIVMAEVM YTFPQAFLIL 180
  181 LIAFQGSDYR LYEASNMLGA SKTKQFLTVT LPSVKYGLIS AMFVVFTLSF TDFGAPKIVG 240
  241 GQYNVLATDV YKQVIGQQNM PMGATVGMIL LIPAIFAFAV DRITQRKQAN FLSSKAVPYR 300
  301 ITANKKRDVA SFIYCSVITF MIILLFVAVG IAASVKVWPY NMSFTFEHFN FSSLTGDGLE 360
  361 AFKNSVIVSA VTAVIGAILT FMFAYAIEKI NQLKFFRKTG YFFSIVPLAI PGLVLGLGYV 420
  421 FFFSQPTIQI LGLSVTNPFH SLYGTIAVLV LVNIIHFYSV TFVTATTALK KLDREFELVS 480
  481 QSMGIPFYKT FFRVTVPMCL PAILEMVMYY FVNSMVTVSA VVFLYAADFK LAAVSIVNMD 540
  541 DAGNVAPAAA MSVLIVVTNI VVRVVYEWGT KALRNRTSQW QKR