YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42736987, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.96
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	149	0.99
Transmembrane Helix	150	170	0.94
Cytoplasmic	171	183	0.88
Transmembrane Helix	184	204	0.93
Non-Cytoplasmic	205	229	0.93
Transmembrane Helix	230	251	0.91
Cytoplasmic	252	259	0.87
Transmembrane Helix	260	279	0.92
Non-Cytoplasmic	280	296	0.84
Transmembrane Helix	297	317	0.95
Cytoplasmic	318	336	0.91
Transmembrane Helix	337	357	0.94
Non-Cytoplasmic	358	370	0.77
Transmembrane Helix	371	391	0.95
Cytoplasmic	392	402	0.92
Transmembrane Helix	403	423	0.89
Non-Cytoplasmic	424	544	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLGTLLFI VCVLIILIPK SASAHAYVVK SNPTENETLK KAPSVVKIEF DEDIQISSFN  60
   61 TLYVRDTSGK RVDLKDAHID KKNKKLLEAG LEENLKNGLY SIQWKVISAD GHPIQGVIPF 120
  121 RIGLAEAGAD DIQVEEMGYV PQIDMIMERG ILYTSFSLFI GVLFFNLIMY KGNATSVRSR 180
  181 SKNIIWISLL GIFISLLFNL PLQAKINADV SWLEAFNPLL LKETLQLSVF SYVWVTQMAL 240
  241 ISLLIIVTYF AMRREKLSSF KVWSIPIVLF IGILVMKAFN SHAYGLKFKD IAVVMDFLHL 300
  301 FAASLWIGGL SSIILLLRKE DNKWNMYWDM IKRFSPWATC AVIVILITGL FNSTFFIPTI 360
  361 HSLFDTKYGL ALLAKVLLFI FMGILGIIHY VKGRMRAEQE LGATVKVEFI IGIIIFVIVA 420
  421 FMTNVQTPPM PPTGPFTESK QLDNGYEMTL NVSPNKVGQN TFHITLKDEN GQPVPDMEQI 480
  481 ILTTQSLDMN MGKGSFKVSA VSPGEYEAEG MYINMTGNWN IQVHGLTKSL DSFDTDYRFI 540
  541 VGGR