YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42737049, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRKVTLYFM TVIILMLVLF EVVFSVSIYR YYYNGIVQYI ESHAKTSTRF FSEYNSLYFI  60
   61 RLQEYSGDII ESFQLEGTEL QLIDRHGTII QSSSGQKVKG KIVIPYSLLE GEMYHQVATT 120
  121 KDNVKQLEVI SPLIHQGQTI GVLKYTTVLT NVNAKIIEII MFTISVGIVI SGIVFLISRR 180
  181 LANSFVRPIE SIIHASSQIA EGTLKKKIKE DYPGELGELA HSLNHMSNKI EKAEQMKNEF 240
  241 IASISHEIRT PLTGIKGWSE TLKTVDHLTE EEIKQGMGII SGETDRLIHL VEELLDFSRL 300
  301 QSNHFNLYKQ KVQLYDILEE TIWQLTPNAE EKQMQFIKTI ERIELIGDRN RLKQIFLNIV 360
  361 QNAIKYSHKN GKVYIEATKN EGQAVIKVKD EGIGIAKEHL PYIEQSFYQI NNHATGAGLG 420
  421 LAIVKKMVEL HGGTINIISK EGIGTTILIK LPL

Type	Start	End	Confidence
Cytoplasmic	1	6	0.71
Transmembrane Helix	7	29	0.76
Non-Cytoplasmic	30	155	0.91
Transmembrane Helix	156	177	0.84
Cytoplasmic	178	453	0.80