YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42784030, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.96
Transmembrane Helix	18	38	0.91
Non-Cytoplasmic	39	56	0.93
Transmembrane Helix	57	79	0.88
Cytoplasmic	80	105	0.95
Transmembrane Helix	106	128	0.89
Non-Cytoplasmic	129	150	0.83
Transmembrane Helix	151	173	0.88
Cytoplasmic	174	196	0.90
Transmembrane Helix	197	217	0.94
Non-Cytoplasmic	218	230	0.79
Transmembrane Helix	231	254	0.92
Cytoplasmic	255	287	0.95
Transmembrane Helix	288	310	0.89
Non-Cytoplasmic	311	528	0.96
Transmembrane Helix	529	552	0.86
Cytoplasmic	553	585	0.94
Transmembrane Helix	586	604	0.95
Non-Cytoplasmic	605	615	0.70
Transmembrane Helix	616	638	0.91
Cytoplasmic	639	649	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLSSIALRN IQRNFKDYFV YFASMIFSIV IYFTFKALQY NSQMEKAAEA SKKISGAFQV  60
   61 SSVMLIIFVA VFIIYSNGFF TRKRKKEVGL YSLLGIRKRQ IGKMLFYENM LMGLMSLIIG 120
  121 IAIGSVLSKL FLELLVSMMG LNLNVHFEVP IAAIIDTALI FFVIILYTSL QGYRLIYRFK 180
  181 LIELFRAERE GEAMPKGSVI MAFISVVLIG SGYFLALMFM KAVKYADFMA VALYILLATV 240
  241 LGTYLLFMFF TVFVLKRART NKSSFYNGMN MVTTSQLLYR IKGNAKSLAT ISILSAVTLT 300
  301 AVGTSVTMYY NTFTQSKAVA PYSYSYEKKD AELDKKVNAI FAEEKKNHPI KDQFEIETVP 360
  361 VKGKFEGDKV DFILNMNYRI SEKYQFMSQS EFNKFAKKID AETVNVAAGE AFIYDSSYME 420
  421 GHEFSPTYKG NKTVFQIGNE TKTLTIKDAN NTAITNLGEL VVVVSDEMYE QAKQAFGTRV 480
  481 VKNIDVKDEK DSKVLTEKLT KVMPAGESEM VLSFRDFYTG FHMGLEGTGL MMFIGMFLGL 540
  541 VFLLATGSII YFKQLTEANA DRERYVVLHK IGVTKQEMKK AIAKQVSFIF AIPLVIGILH 600
  601 SLFALKGLAT LIQFEIMIPL LISIGVYGVI YIGYYFLTVR SYYKIVSAK