YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42784356, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.90
Transmembrane Helix	5	24	0.92
Cytoplasmic	25	40	0.93
Transmembrane Helix	41	63	0.87
Non-Cytoplasmic	64	68	0.80
Transmembrane Helix	69	88	0.93
Cytoplasmic	89	97	0.86
Transmembrane Helix	98	120	0.90
Non-Cytoplasmic	121	127	0.80
Transmembrane Helix	128	147	0.92
Cytoplasmic	148	152	0.81
Transmembrane Helix	153	172	0.92
Non-Cytoplasmic	173	178	0.81
Transmembrane Helix	179	199	0.95
Cytoplasmic	200	206	0.79
Transmembrane Helix	207	229	0.87
Non-Cytoplasmic	230	235	0.72
Transmembrane Helix	236	256	0.93
Cytoplasmic	257	287	0.89
Transmembrane Helix	288	305	0.95
Non-Cytoplasmic	306	313	0.61
Transmembrane Helix	314	334	0.93
Cytoplasmic	335	353	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYAILASFI TVLIVTPLVI KLAFKIGATD KPNARKVHQK IMPRLGGLAI FIGVAVGFVV  60
   61 GGLYEQRMLS ITLGAIIIVI IGILDDMYEL SAKVKFSGQL LVAIMIVKSG LLVQVLYIPI 120
  121 LGDTELGWLA YPITVFWIVG ITNAINLIDG LDGLSAGISS IVLATLAYMA FTSPWGTGAA 180
  181 IILPLALITL ASTIGFLFYN FHPAKIFMGD TGALFLGYCI SVISLLGLYK SVTLFSFIVP 240
  241 VIILGVPVFD TTFAIIRRIV NKKPISAPDK SHLHHRLLAM GFSHRKTVLI IYAFGIFFSV 300
  301 NAIIFSSATL WLSIILLFVL IFFTEIIAEV IGLVHERYKP LISFYKKVKK RED