YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85093638
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSSPPAD IFSGITQSLN STHATLTLPI PPADRDHLEN QVLFLFDNHG QLLNVTTTYI  60
   61 DAFNNMLVST TINYATQIGA TFIMLAIMLL MTPRRRFKRL PTIISLLALC INLIRVVLLA 120
  121 LFFPSHWTDF YVLYSGDWQF VPPGDMQISV AATVLSIPVT ALLLSALMVQ AWSMMQLWTP 180
  181 LWRALVVLVS GLLSLVTVAM SFANCIFQAK NILYADPLPS YWVRKLYLAL TTGSISWFTF 240
  241 LFMIRLVMHM WTNRSILPSM KGLKAMDVLI ITNSILMLIP VLFAGLEFLD SASGFESGSL 300
  301 TQTSVVIVLP LGTLVAQRIA TRGYMPDSLE ASSGPNGSLP LSNLSFAGGG GGGSGGHKDK 360
  361 ENGGGIIPPT TNNTAATNFS SSIACSGISC LPKVKRMTAS SASSSQRPLL TMTNSTIASN 420
  421 DSSGFPSPGI HNTTTTTTQY QYSMGMNMPN FPPVPFPGYQ SRTTGVTSHI VSDGRHHQGM 480
  481 NRHPSVDHFD RELARIDDED DDGYPFASSE KAVMHGDDDD DVERGRRRAL PPSLGGVRVE 540
  541 RTIETRSEER MPSPDPLGVT KPRSFE

Type	Start	End	Confidence
Non-Cytoplasmic	1	71	0.86
Transmembrane Helix	72	92	0.90
Cytoplasmic	93	102	0.86
Transmembrane Helix	103	124	0.93
Non-Cytoplasmic	125	147	0.91
Transmembrane Helix	148	169	0.93
Cytoplasmic	170	180	0.83
Transmembrane Helix	181	206	0.85
Non-Cytoplasmic	207	225	0.93
Transmembrane Helix	226	248	0.92
Cytoplasmic	249	267	0.89
Transmembrane Helix	268	286	0.96
Non-Cytoplasmic	287	298	0.78
Transmembrane Helix	299	316	0.70
Cytoplasmic	317	566	0.70