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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42521923, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.54
Topology Confidence: 0.31
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHKNRLFLF TSVLVLGTLL IAGTVGYKMG SSSLEQSTRE RLVQIRDFKS DEIQKEFAYL  60
   61 KNALVLTSEY TPILQFLRRY PQEHQQMQSW LRSHGKATAW RNEMEEHRPP QVSDYPRILE 120
  121 QFTALPLFLQ YQFQQSARSQ NRPLPQLASV NGFSDLNYFR SYESLHSKLF DVLERSHLND 180
  181 VLLIEPNGTV AYSAAKSLAL GDNLISGPLS NSRLAQAYRW SLNAPKGATK YFDFTPVSHF 240
  241 WHTPAAFLTM PLFDQTNFVG TLVFQLSLER IDQILSHNSK WKELGLGMTG EVVAFGTDGF 300
  301 VRNNPRLYLE SPVQFLQKVR QQEDARAALE SIERSSSASL SLILPPTQIR RYMERGVAFD 360
  361 SGEDYMGTRS LQSAGRVNVV DNTDWIIISK MDLNEALAPL SFKLPWFFIG GFLLWSLALG 420
  421 GAWLVYRRMF FPSQVLSDGM DKLKSHNFSE TLQAPEEEEY KDLYKKFDEI REDFRKTKAA 480
  481 RDFLENVVYS LNEVFFIVEV EDVEDSLRKN FRVRGFNPTA QSLTGAPGPA LKNSDLSLWL 540
  541 ETDYSVIENS LRERDANKST HTAEASLKKI TGDRVPLEVS WARVNTENKD KVLLAMMGTD 600
  601 MRWKKEIEKE LKLKEELLKE SQSLSKTGSF RWDIRTGKCL WSEEEFHLLG LTPDNVVPSY 660
  661 DLFRSLILSE DLPVFDKALA EAHKNIAPFH VDLRMKKQDS NDLIWVRCQG RTEYDDYGNA 720
  721 LFMYVTTQDI TELRRVEQSL ITTKNEALKA SQAKSEFLAQ MSHEIRTPMN AIMGMAELLK 780
  781 ETRLDVDQKY YVTIFCKAGE VLMSLINDIL DLSKIEAGEV SIENIPFDMK KLMADVEDMM 840
  841 KPRALEKGLN CICEIAPGVS PHLMGDPTKL RQVLINLIGN SIKFTNKGQV RLVIGKNPSK 900
  901 KDTLLISITD TGIGIPEDRQ HMIFQKFSQA DNSVTRKYGG TGLGLAISKS LVELMGGQIW 960
  961 FKSRPGTGTT FFFTIPYREQ IYNPVNYMPV PMRTPELDFV SPKPRDPNHK VKILIADDTE1020
 1021 DNRTLFTHYL KNEPFEIIEA ENGLQAIDQI KSGEFDIVFM DVQMPEMDGY AATDRIREWE1080
 1081 KESHKPPVPI IALTAHALAE DRQKSLRAGC NDHIAKPFKK DTLLGVINKY SL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle