YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42522245, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	46	0.56
Transmembrane Helix	47	69	0.76
Cytoplasmic	70	75	0.61
Transmembrane Helix	76	95	0.83
Non-Cytoplasmic	96	99	0.78
Transmembrane Helix	100	120	0.89
Cytoplasmic	121	130	0.85
Transmembrane Helix	131	151	0.94
Non-Cytoplasmic	152	157	0.75
Transmembrane Helix	158	177	0.95
Cytoplasmic	178	196	0.80
Transmembrane Helix	197	217	0.90
Non-Cytoplasmic	218	226	0.76
Transmembrane Helix	227	246	0.93
Cytoplasmic	247	259	0.84
Transmembrane Helix	260	290	0.80
Non-Cytoplasmic	291	335	0.53
Transmembrane Helix	336	357	0.84
Cytoplasmic	358	369	0.76
Transmembrane Helix	370	391	0.86
Non-Cytoplasmic	392	400	0.72
Transmembrane Helix	401	420	0.82
Cytoplasmic	421	650	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVTVIKIN QMPAVFFVIG LRLKDRSRLV TGFLPGSKPL GTFVSMILHE QLLQILAFLG  60
   61 FSVVLVSLFQ KLGLGTILGY LAAGILIGPL GWGLISDFHF VQTIAEFGVV FLLFIIGLEL 120
  121 QPKKLWGLRK TLLGFGGLQI LVCTVVFTLA GHQLGISWAS AAVVGFALSL SSTAFALQSL 180
  181 SERKVLNTEF GRASFAILLM QDVVAIPALA VIPSLGLVTA STREVNWGGA LAIFIGLALG 240
  241 SRLLMGRFLQ VVAETRSREL FTGVTLLTVI GVAFLMESVG LSMALGAFLA GVLLSESEYR 300
  301 HELEADLEPF KGLLMGLFFV SVGMSVKLSL LVENPGLILG ITVGYMVLKG FLIYGVGRVM 360
  361 KLHRPASNNL AVYLVQGGEF AFVIFGVGQS AQVLSPEWTQ RFTLVVTLSM IASPIIIVLN 420
  421 EKIQAMIACK RPGAGPQYDQ IDEADNGNAV IIAGFGRVGQ IFGRILRTQD VKFTAIEHDT 480
  481 EQIDLLRRFG NKVYYGDASR PEILEAAGIK NAKYFVLAVD DVETSNNIAR ILHEDYPHVK 540
  541 VFARSRNRQH TFDLMAAGVT QVRRETIDSS IALSEQLLVE MGTPAKRAHE IIERFRLHDE 600
  601 LMLQEQFKVR HDQKTFIDVS RQAAQQLAQV LKEDAEKTYI DPQHPPEASK