YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45440991, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQKRYLGKS GLEVSALGLG CMGLSYGYGP ATDTRQAVEL IRAAVERGVT FFDTAEVYGP  60
   61 YLNEEVVGEA LKPFRDQVVI ATKFGFTFGE DNKQQILNSR PEHIREAVEG SLRRLKTDVI 120
  121 DLLYQHRVDP DVPIEDVAGT VKDLIAEGKV KHFGLSEAGA QTIRRAHAIQ PVAALQSEYS 180
  181 MWWREPEQEI LPLLEELGIG FVPFSPLGKG FLTGAIKAGA TFGEDDFRSK VPRFAAEALE 240
  241 ANERLVALLG ILAAEKGVTS AQIALAWLLA QKPWIVPIPG TTKLHRLEEN LGAADITLSQ 300
  301 DDIWNITQAL ATVKIVGERY PAAMQARVGR

Type	Start	End	Confidence
Signal Peptide	1	27	0.38
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	330	0.98